Function reference • phylosem

All functions

Mlifehist_ver1_0: Fisheries natural mortality example

as_fitted_DAG(): Convert phylosem to phylopath output

as_phylo4d(): Convert phylosem to phylo4d

as_sem(): Convert phylosem to sem output

average(): Choose model

average(<compare_phylosem>): Choose model

best(): Extract best fitted model

best(<compare_phylosem>): Extract best fitted model

checkDepPackageVersion(): Check for version mismatch in dependent binary packages

choice(): Choose model

choice(<compare_phylosem>): Choose model

coef(<phylosem>): Extract path coefficients

compare_phylosem(): Compare phylogenetic structural equation models

list_parameters(): List fixed and random effects

parse_path(): Parse path

phylosem(): Fit phylogenetic structural equation model

phylosem_control(): Detailed control for phylosem structure

print(<phylosem>): Print parameter estimates and standard errors.

reinstalling: Reinstalling binary dependencies

summary(<phylosem>): summarize phylosem

vcov(<phylosem>): Extract Variance-Covariance Matrix