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Changelog

Source: NEWS.md

phylosem 1.1.3

CRAN release: 2024-02-01

  • Removing fit_tmb to simplify code and remove unnecessary warnings
  • Adding codecov and extra tests
  • Fixing R-CMD-check to force build Matrix/TMB from source

phylosem 1.1.2

CRAN release: 2023-12-20

  • Adding new functions to provide warning if Matrix version doesn’t match what’s expected by TMB

phylosem 1.1.1

CRAN release: 2023-11-26

  • Re-adding phylosignal as SUGGESTS
  • Re-adding phylosignal to Fisheries vignette
  • adding arguemnt what to as_phylo4d to allow easy extraction of standard errors

phylosem 1.1.0

CRAN release: 2023-10-06

  • Adding new S3 generic functions: logLik and vcov
  • Adding vignette “fisheries” associated with paper “Trees for fishes: The neglected role for phylogenetic comparative methods in fisheries science” accepted at Fish and Fisheries

phylosem 1.0.2

CRAN release: 2023-09-22

  • Fixed bug arising when data are missing for observations in the earliest tips and for the first inputted variable
  • Updating vignette to show confidence intervals on alpha/kappa/lambda as well as lnalppha/lnkappa/logitlambda

phylosem 1.0.1

CRAN release: 2023-09-19

  • Address request from CRAN to use Suggests packages conditionally in examples
  • Continuing to use Suggests packages unconditionally in vignettes based on Wickham guidance online

phylosem 1.0.0

CRAN release: 2023-08-25

  • Attempting to fix warnings