Database of FishBase (population-dynamics, size, growth, maturity, mortality parameters), habitat, trophic, reproductive, and morphometric traits
Source:R/data.R
FishBase_and_Morphometrics.RdOutput from `Fit_model` applied to database scraped from www.FishBase.org using `rfishbase` as well as many other variables
Format
A tagged list containing data and predictions
- text
text file specifying the SEM structure
- N_obsfactors
Number of factors used for measurent-error in life-history model
- beta_gv
Predictive mean (in transformed space) among traits for every taxon in tree
- Cov_gvv
Covariance among traits for every taxon in tree
- Use_REML
Boolean, whether REML was used for model
- ParentChild_gz
Record of taxonomic tree
- ParHat
Parameter estimates and predictions
- g_i
Associates every observation with a level of the taxonomic tree
- Y_ij
Life-history parameters from FishBase
- Z_ik
Taxonomy for each datum
- SR_obs
Stock-recruit records from RAM Legacy stock-recruit database
- StockData
Auxiliary information for every stock with stock-recruit information
- RAM
Matrix specifying SEM parameters
- SEM_model
Description of SEM path diagram
- tree
Evolutionary tree in phylo format, for use in plotting, with order matching ParentChild_gz
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