plot the predictive distribution for one or two variables
extracted using predict.phylosem
Usage
# S3 method for class 'predict_phylosem'
plot(x, y, variables = 1, data, data_labels, distance_threshold = 0, tree, ...)Arguments
- x
Output from
predict.phylosem- y
Not used
- variables
which variables to plot (can only plot one or two at a time)
- data
optional data.frame of fitted data e.g.,
fit$data- data_labels
For each row of
data, listing the corresponding name fromtree$tip.label. Default pullsdata_labelsfromrownames(data)- distance_threshold
distance from taxa to use when plotting data
- tree
phylogenetic structure, using class
as.phylo- ...
Not used