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Plot phylosem

Source: R/phylosem.R
plot.phylosem.Rd

Plot from a fitted phylosem model

Usage

# S3 method for class 'phylosem'
plot(
  x,
  y,
  edge_label = c("name", "value"),
  digits = 2,
  vertices = NULL,
  keep_twoheaded = FALSE,
  style = c("ggraph", "igraph"),
  ...
)

Arguments

x

Output from phylosem

y

Not used

edge_label

Whether to plot parameter names, estimated values, or estimated values along with stars indicating significance at 0.05, 0.01, or 0.001 levels (based on two-sided Wald tests)

digits

integer indicating the number of decimal places to be used

vertices

optional charater vector, listing variables to plot and subsetting edges to only plot those connecting those vertices

keep_twoheaded

whether to included two-headed arrows

style

Whether to make a graph using igraph or ggraph

...

arguments passed to plot.igraph

Value

Invisibly returns the output from graph_from_data_frame which was passed to plot.igraph for plotting.

Details

This function coerces output from a graph and then plots the graph.